PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g031870.3
Common NameMTR_2g031870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 272aa    MW: 30443.6 Da    PI: 9.4012
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g031870.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-07531128
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                     +++W++eE+  l+ +v ++G + W+  +
  Medtr2g031870.3  5 KQKWSEEEESALKAGVIKHGDK-WRNLS 31
                     79******************99.*8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-5231IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.102.1E-1493164IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.53E-1693171IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.8E-1293158IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.19195163IPR005818Linker histone H1/H5, domain H15
PfamPF005381.6E-7100156IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGVPKQKWSE EEESALKAGV IKHGDKWRNL SVMASGWASR EKPKGAMKRV HYQAPRHEDN  60
SMAVTPFFLS DDEIVDVQPL QVSRDMLQIS GPKSSSIRLD NLIMEAISSL NELGGSNKTT  120
IASFIEDHYW APADFKKLLS AKLKYLTSRG KLIKVKRRYR IAPTPAYSDR GRHPSTLLLE  180
GRQKGSMKFY RDESNIPTKS EIDLELEKIR SMSAQEAAAY AARAVAEAEA LMAEAEEATK  240
EAEAAEAEAD AMEAFVEAER KRLKEKNTQR R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.76480.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1377200.0BT137720.1 Medicago truncatula clone JCVI-FLMt-13E3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013463065.10.0myb transcription factor
SwissprotQ8VWK49e-64TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A072V6570.0A0A072V657_MEDTR; Myb transcription factor
STRINGGLYMA15G14320.43e-95(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.36e-64telomere repeat binding factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]